MatrixPlot: visualizing sequence constraints.

Gorodkin, J; Staerfeldt, H H; Lund, O; Brunak, S · Bioinformatics · 1999

other · Level V

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Abstract

MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information about the sequences (e.g. a sequence logo profile) along the edges of the plot, as well as zoom in on any region in the plot. MatrixPlot can be obtained on request, and can also be accessed online at http://www. cbs.dtu.dk/services/MatrixPlot. gorodkin@cbs.dtu.dk

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