Sausage: protein threading with flexible force fields.
basic_science · Level V
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- Record sourced from PubMed, PMID 10746000.
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Abstract
Sausage is a protein sequence threading program, but with remarkable run-time flexibility. Using different scripts, it can calculate protein sequence-structure alignments, search structure libraries, swap force fields, create models from alignments, convert file formats and analyse results. There are several different force fields which might be classed as knowledge-based, although they do not rely on Boltzmann statistics. Different force fields are used for alignment calculations and subsequent ranking of calculated models.
Medical subject headings
- Proteins
- Sequence Alignment
- Software