Storing biological sequence databases in relational form.

Xie, G; DeMarco, R; Blevins, R; Wang, Y · Bioinformatics · 2000

other · Level V

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Abstract

We have created a set of applications using Perl and Java in combination with XML technology to install biological sequence databases into an Oracle RDBMS. An easy-to-use interface using Java has been created for database query and other tools developed to integrate with our in-house bioinformatics applications. AVAILIBILITY: The database schema, DTD file, and source codes are available from the authors via email. guochun_ xie@merck. com

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