TRES: comparative promoter sequence analysis.

Katti, M V; Sakharkar, M K; Ranjekar, P K; Gupta, V S · Bioinformatics · 2000

other · Level V

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Abstract

Comparative promoter analysis is a promising strategy for elucidation of common regulatory modules conserved in evolutionarily related sequences or in genes showing common expression profiles. To facilitate such analysis, we have developed a software tool that detects conserved transcription factor binding sites, cis-elements, palindromes and k-tuples simultaneously in a set of sequences, and thus helps to identify putative motifs for designing further experiments.

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