Circles: automating the comparative analysis of RNA secondary structure.
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Abstract
Circles is a program for inferring RNA secondary structure using maximum weight matching. The program can read in an alignment in FASTA, ClustalW, or NEXUS format, compute a maximum weight matching, and export one or more secondary structures in various file formats. The program is available at no cost from http://taxonomy.zoology.gla.ac.uk/rod/circles/ and requires Windows 95/98/NT. r.page@bio.gla.ac.uk
Medical subject headings
- Nucleic Acid Conformation
- RNA
- Software