Circles: automating the comparative analysis of RNA secondary structure.

Page, R D · Bioinformatics · 2000

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Abstract

Circles is a program for inferring RNA secondary structure using maximum weight matching. The program can read in an alignment in FASTA, ClustalW, or NEXUS format, compute a maximum weight matching, and export one or more secondary structures in various file formats. The program is available at no cost from http://taxonomy.zoology.gla.ac.uk/rod/circles/ and requires Windows 95/98/NT. r.page@bio.gla.ac.uk

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