mmsearch: a motif arrangement language and search program.
other · Level V
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- Record sourced from PubMed, PMID 11751236.
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Abstract
This paper presents a language for describing arrangements of motifs in biological sequences, and a program that uses the language to find the arrangements in motif match databases. The program does not by itself search for the constituent motifs, and is thus independent of how they are detected, which allows it to use motif match data of various origins. The program can be tested online at http://hits.isb-sib.ch and the distribution is available from ftp://ftp.isrec.isb-sib.ch/pub/software/unix/mmsearch-1.0.tar.gz Thomas.Junier@isrec.unil.ch The full documentation about mmsearchis available from http://hits.isb-sib.ch/~tjunier/mmsearch/doc.
Medical subject headings
- Programming Languages
- Proteins
- Software