TROLL--tandem repeat occurrence locator.
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- Record sourced from PubMed, PMID 12016062.
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Abstract
Tandem Repeat Occurrence Locator (TROLL), is a light-weight Simple Sequence Repeat (SSR) finder based on a slight modification of the Aho-Corasick algorithm. It is fast and only requires a standard Personal Computer (PC) to operate. We report running times of 127 s to find all SSRs of length 20 bp or more on the complete Arabdopsis genome--approx. 130 Mbases divided in five chromosomes--using a PC Athlon 650 MHz with 256 MB of RAM. TROLL is an open source project and is available at http://finder.sourceforge.net.
Medical subject headings
- Algorithms
- Genome, Plant
- Microsatellite Repeats
- Sequence Analysis, DNA
- Software