OrthoGUI: graphical presentation of Orthostrapper results.
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Abstract
Orthostrapper is a program that calculates orthology support values for pairs of sequences in a multiple alignment (Storm and Sonnhammer, Bioinformatics, 18, 92-99, 2002). Here we present OrthoGUI, a web interface and display tool for Orthostrapper analysis. OrthoGUI visualizes the Orthostrapper output in both tabular and tree representations, and can also apply a clustering algorithm to identify groups of multiple orthologs, which are indicated by colour coding. http://www.cgb.ki.se/OrthoGUI CONTACT: erik.sonnhammer@cgb.ki.se
Medical subject headings
- Computer Graphics
- Databases, Protein
- Information Storage and Retrieval
- Sequence Alignment
- Sequence Analysis, Protein
- Sequence Homology