MAVG: locating non-overlapping maximum average segments in a given sequence.
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Abstract
MAVG is a software tool for finding k non-overlapping maximum-average segments that are sufficiently long in a given sequence of real numbers, for any k > 0. It has applications in several areas of biomolecular sequence analysis including locating GC-rich regions and CpG islands in a genomic sequence, and annotating multiple sequence alignments. http://iubio.bio.indiana.edu/soft/molbio/pattern/cpg_islands/.
Medical subject headings
- Algorithms
- CpG Islands
- Sequence Alignment
- Sequence Analysis, DNA
- Software