TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 12651724.
- No licence information is recorded for this record.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
TGICL is a pipeline for analysis of large Expressed Sequence Tags (EST) and mRNA databases in which the sequences are first clustered based on pairwise sequence similarity, and then assembled by individual clusters (optionally with quality values) to produce longer, more complete consensus sequences. The system can run on multi-CPU architectures including SMP and PVM.
Medical subject headings
- Database Management Systems
- Databases, Nucleic Acid
- Expressed Sequence Tags
- Gene Expression Profiling
- Information Storage and Retrieval
- Sequence Alignment
- Sequence Analysis, DNA