Perfect phylogeny haplotyper: haplotype inferral using a tree model.
basic_science · Level V
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Abstract
We have developed an efficient program, the Perfect Phylogeny Haplotyper (PPH) that takes in unphased population genotype data, and determines if that data can be explained by haplotype pairs that could have evolved on a perfect phylogeny.
Medical subject headings
- Algorithms
- Gene Expression Profiling
- Genetic Variation
- Haplotypes
- Models, Genetic
- Phylogeny
- Software