GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana.
basic_science · Level V
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Abstract
GABI-Kat SimpleSearch is a database of flanking sequence tags (FSTs) of T-DNA mutagenized Arabidopsis thaliana lines that were generated by the GABI-Kat project. Sequences flanking the T-DNA insertion sites were aligned to the A.thaliana genome sequence, annotated with information about the FST, the insertion site and the line from which the FST was derived. A web interface permits text-based as well as sequence-based searches for relevant insertions. GABI-Kat SimpleSearch aims to help biologists to quickly find T-DNA insertion mutants for their research. http://www.mpiz-koeln.mpg.de/GABI-Kat/
Medical subject headings
- Arabidopsis
- DNA Transposable Elements
- DNA, Bacterial
- Database Management Systems
- Databases, Nucleic Acid
- Expressed Sequence Tags
- Information Storage and Retrieval
- Mutagenesis, Insertional