Designing hardware for protein sequence analysis.
other · Level V
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- Record sourced from PubMed, PMID 14512343.
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Abstract
We present the architecture of PROSIDIS, a special purpose co-processor designed to search for the occurrence of substrings similar to a given 'template string' within a proteome. Actual tests show speed up figures ranging from 5 to 50 with respect to conventional general-purpose processors. the PROSIDIS configuration file and the c code are available at http://www.enea.it/hpcn/php/rosato/
Medical subject headings
- Algorithms
- Computers
- Computing Methodologies
- Proteins
- Proteomics
- Sequence Analysis, Protein