MREPATT: detection and analysis of exact consecutive repeats in genomic sequences.
basic_science · Level V
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Abstract
We have developed a program to determine the number, length and position of exact consecutive repeats of short sequences in DNA fragments or whole genomes. The program also gives the statistical significance of results by comparing them with those expected for a random sequence generated according to a Markovian model. MREPATT can be accessed on line at http://www.lsi.upc.es/~alggen under the RESEARCH and SEARCH links.
Medical subject headings
- Chromosome Mapping
- Gene Expression Profiling
- Repetitive Sequences, Nucleic Acid
- Sequence Alignment
- Sequence Analysis, DNA
- Software