Visualization for genomics: the Microbial Genome Viewer.
other · Level V
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- Record sourced from PubMed, PMID 14988111.
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Abstract
A Web-based visualization tool, the Microbial Genome Viewer, is presented that allows the user to combine complex genomic data in a highly interactive way. This Web tool enables the interactive generation of chromosome wheels and linear genome maps from genome annotation data stored in a MySQL database. The generated images are in scalable vector graphics (SVG) format, which is suitable for creating high-quality scalable images and dynamic Web representations. Gene-related data such as transcriptome and time-course microarray experiments can be superimposed on the maps for visual inspection. The Microbial Genome Viewer 1.0 is freely available at http://www.cmbi.kun.nl/MGV
Medical subject headings
- Chromosome Mapping
- Computer Graphics
- Gene Expression Profiling
- Genome, Bacterial
- Genome, Fungal
- Genomics
- User-Computer Interface