AntiHunter: searching BLAST output for EST antisense transcripts.
other · Level V
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Abstract
AntiHunter is a new web-based tool for the identification of expressed sequence tag (EST) antisense transcripts from BLAST output. In order to perform an analysis, user is required to input a genomic sequence plus an associated list of transcript names and coordinates of the genomic region (i.e. genome annotation). After masking the repeated regions (if any), program will perform a BLASTN search of the input sequence versus the selected EST database, reporting by Email the EST entries that reveal a putative antisense transcript with respect to the user supplied list.
Medical subject headings
- Algorithms
- DNA, Antisense
- Expressed Sequence Tags
- Information Storage and Retrieval
- Internet
- Sequence Alignment
- Sequence Analysis, DNA
- Software
- Transcription, Genetic