Java Treeview--extensible visualization of microarray data.
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- Record sourced from PubMed, PMID 15180930.
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Abstract
Open source software encourages innovation by allowing users to extend the functionality of existing applications. Treeview is a popular application for the visualization of microarray data, but is closed-source and platform-specific, which limits both its current utility and suitability as a platform for further development. Java Treeview is an open-source, cross-platform rewrite that handles very large datasets well, and supports extensions to the file format that allow the results of additional analysis to be visualized and compared. The combination of a general file format and open source makes Java Treeview an attractive choice for solving a class of visualization problems. An applet version is also available that can be used on any website with no special server-side setup.
Medical subject headings
- Computer Graphics
- Databases, Bibliographic
- Gene Expression Profiling
- Information Storage and Retrieval
- Oligonucleotide Array Sequence Analysis
- Software
- User-Computer Interface