the JigCell model builder and run manager.

Vass, Marc; Allen, Nicholas; Shaffer, Clifford A; Ramakrishnan, Naren; Watson, Layne T; Tyson, John J · Bioinformatics · 2004

basic_science · Level V

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Abstract

We describe the JigCell Model Builder (JCMB), a tool for creating biochemical reaction network models. JCMB is designed for ease of use and its interface uses the standard spreadsheet metaphor. The JigCell Run Manager (JCRM) is a tool for organizing the large collections of simulation runs typically required by reaction network modeling activities. JCMB and JCRM are part of the JigCell suite available at http://jigcell.biol.vt.edu.

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