GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.
other · Level V
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- Record sourced from PubMed, PMID 15297299.
- Also identified by PMC identifier 3037731.
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Abstract
GO::TermFinder comprises a set of object-oriented Perl modules for accessing Gene Ontology (GO) information and evaluating and visualizing the collective annotation of a list of genes to GO terms. It can be used to draw conclusions from microarray and other biological data, calculating the statistical significance of each annotation. GO::TermFinder can be used on any system on which Perl can be run, either as a command line application, in single or batch mode, or as a web-based CGI script. The full source code and documentation for GO::TermFinder are freely available from http://search.cpan.org/dist/GO-TermFinder/.
Medical subject headings
- Database Management Systems
- Databases, Protein
- Gene Expression Profiling
- Natural Language Processing
- Oligonucleotide Array Sequence Analysis
- Software
- User-Computer Interface