tPatternHunter: gapped, fast and sensitive translated homology search.
other · Level V
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- Record sourced from PubMed, PMID 15374861.
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Abstract
New ideas, spaced seeds and gapped alignment before 6-frame translation are implemented for translated homology search in tPatternHunter. The new software compares favorably with tBLASTx. The software is free to academics at http://www.bioinformaticssolutions.com/downloads/ph-academic/ bma@csd.uwo.ca.
Medical subject headings
- Algorithms
- Protein Biosynthesis
- Sequence Alignment
- Sequence Analysis
- Software