SNPP: automating large-scale SNP genotype data management.
other · Level V
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- Record sourced from PubMed, PMID 15377503.
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Abstract
To manage high-throughput single nucleotide polymorphism (SNP) genotyping data efficiently, we developed a dynamic general database management system-SNPP (SNP Processor). It provides several functions, including data importing with comparison, Mendelian inheritance check within pedigrees, data compiling and exporting. Furthermore, SNPP may generate files for repeat genotyping and transform them into files that can be executed by a liquid handling system. http://orclinux.creighton.edu/snpp/ lanjuanzhao@creighton.edu
Medical subject headings
- Algorithms
- Chromosome Mapping
- Database Management Systems
- Databases, Nucleic Acid
- Linkage Disequilibrium
- Sequence Alignment
- Sequence Analysis, DNA
- User-Computer Interface