Database driven test case generation for protein-protein docking.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 15479711.
- No licence information is recorded for this record.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
We present a method for automatic test case generation for protein-protein docking. A consensus-type approach is proposed processing the whole PDB and classifying protein structures into complexes and unbound proteins by combining information from three different approaches (current PDB-at-a-glance classification, search of complexes by sequence identical unbound structures and chain naming). Out of this classification test cases are generated automatically. All calculations were run on the database. The information stored is available via a web interface. The user can choose several criteria for generating his own subset out of our test cases, e.g. for testing docking algorithms. http://bibiserv.techfak.uni-bielefeld.de/agt-sdp/ fzoellne@techfak.uni-bielefeld.de.
Medical subject headings
- Algorithms
- Databases, Protein
- Protein Interaction Mapping
- Proteins
- Sequence Analysis, Protein