CGH-Plotter: MATLAB toolbox for CGH-data analysis.
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Abstract
CGH-Plotter is a MATLAB toolbox with a graphical user interface for the analysis of comparative genomic hybridization (CGH) microarray data. CGH-Plotter provides a tool for rapid visualization of CGH-data according to the locations of the genes along the genome. In addition, the CGH-Plotter identifies regions of amplifications and deletions, using k-means clustering and dynamic programming. The application offers a convenient way to analyze CGH-data and can also be applied for the analysis of cDNA microarray expression data. CGH-Plotter toolbox is platform independent and requires MATLAB 6.1 or higher to operate.
Medical subject headings
- Data Display
- Data Interpretation, Statistical
- Hybridization, Genetic
- Protein Array Analysis
- User-Computer Interface