EGene: a configurable pipeline generation system for automated sequence analysis.

Durham, Alan M; Kashiwabara, André Y; Matsunaga, Fernando T G; Ahagon, Paulo H; Rainone, Flávia; Varuzza, Leonardo; Gruber, Arthur · Bioinformatics · 2005

other · Level V

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Abstract

EGene is a generic, flexible and modular pipeline generation system that makes pipeline construction a modular job. EGene allows for third-party programs to be used and integrated according to the needs of distinct projects and without any previous programming or formal language experience being required. EGene comes with CoEd, a visual tool to facilitate pipeline construction and documentation. A series of components to build pipelines for sequence processing is provided. http://www.lbm.fmvz.usp.br/egene/ alan@ime.usp.br; argruber@usp.br http://www.lbm.fmvz.usp.br/egene/

Medical subject headings