ORIOGEN: order restricted inference for ordered gene expression data.

Peddada, S; Harris, S; Zajd, J; Harvey, E · Bioinformatics · 2005

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Abstract

ORIOGEN is a user-friendly Java-based software package for selecting and clustering genes according to their profiles across various treatment groups. In particular, ORIOGEN is useful for analyzing data obtained from time-course or dose-response type experiments. The ORIOGEN software can be downloaded freely from http://dir.niehs.nih.gov/dirbb/oriogen/index.cfm peddada@niehs.nih.gov (for statistical questions) and oriogen@constellagroup.com (for software support) ORIOGEN has a full set of help files. Also, an example input file is provided with the download.

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