HoSeqI: automated homologous sequence identification in gene family databases.
basic_science · Level V
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- Record sourced from PubMed, PMID 16682422.
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Abstract
We present a web service allowing to automatically assign sequences to homologous gene families from a set of databases. After identification of the most similar gene family to the query sequence, this sequence is added to the whole alignment and the phylogenetic tree of the family is rebuilt. Thus, the phylogenetic position of the query sequence in its gene family can be easily identified. http://pbil.univ-lyon1.fr/software/HoSeqI/.
Medical subject headings
- Algorithms
- Databases, Genetic
- Multigene Family
- Sequence Alignment
- Sequence Analysis, DNA
- Software