MASQOT-GUI: spot quality assessment for the two-channel microarray platform.
other · Level V
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- Record sourced from PubMed, PMID 16899490.
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Abstract
MASQOT-GUI provides an open-source, platform-independent software pipeline for two-channel microarray spot quality control. This includes gridding, segmentation, quantification, quality assessment and data visualization. It hosts a set of independent applications, with interactions between the tools as well as import and export support for external software. The implementation of automated multivariate quality control assessment, which is a unique feature of MASQOT-GUI, is based on the previously documented and evaluated MASQOT methodology. Further abilities of the application are outlined and illustrated. MASQOT-GUI is Java-based and licensed under the GNU LGPL. Source code and installation files are available for download at http://masqot-gui.sourceforge.net/
Medical subject headings
- Information Storage and Retrieval
- Oligonucleotide Array Sequence Analysis
- Software
- Spectrometry, Fluorescence
- User-Computer Interface