Bio3d: an R package for the comparative analysis of protein structures.

Grant, Barry J; Rodrigues, Ana P C; ElSawy, Karim M; McCammon, J Andrew; Caves, Leo S D · Bioinformatics · 2006

other · Level V

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Abstract

An automated procedure for the analysis of homologous protein structures has been developed. The method facilitates the characterization of internal conformational differences and inter-conformer relationships and provides a framework for the analysis of protein structural evolution. The method is implemented in bio3d, an R package for the exploratory analysis of structure and sequence data. The bio3d package is distributed with full source code as a platform-independent R package under a GPL2 license from: http://mccammon.ucsd.edu/~bgrant/bio3d/

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