NMPP: a user-customized NimbleGen microarray data processing pipeline.
basic_science · Level V
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Abstract
NMPP package is a bundle of user-customized tools based on established algorithms and methods to process self-designed NimbleGen microarray data. It features a command-line-based integrative processing procedure that comprises five major functional components, namely the raw microarray data parsing and integrating module, the array spatial effect smoothing and visualization module, the probe-level multi-array normalization module, the gene expression intensity summarization module and the gene expression status inference module. http://plantgenomics.biology.yale.edu/nmpp
Medical subject headings
- Algorithms
- Gene Expression Profiling
- Oligonucleotide Array Sequence Analysis
- Software
- User-Computer Interface