A consensus view of protein dynamics.

Rueda, Manuel; Ferrer-Costa, Carles; Meyer, Tim; Pérez, Alberto; Camps, Jordi; Hospital, Adam; Gelpí, Josep Lluis; Orozco, Modesto · Proc Natl Acad Sci U S A · 2007

basic_science · Level V

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Abstract

The dynamics of proteins in aqueous solution has been investigated through a massive approach based on "state of the art" molecular dynamics simulations performed for all protein metafolds using the four most popular force fields (OPLS, CHARMM, AMBER, and GROMOS). A detailed analysis of the massive database of trajectories (>1.5 terabytes of data obtained using approximately 50 years of CPU) allowed us to obtain a robust-consensus picture of protein dynamics in aqueous solution.

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