Visualization of unfavorable interactions in protein folds.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 18375963.
- Also identified by DOI 10.1093/bioinformatics/btn108.
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Abstract
Three dimensional structures of proteins contain errors which often originate from limitations of the experimental techniques employed. Such errors frequently result in unfavorable atomic interactions. Here we present a new web service, called Interaction Viewer, for the visualization and correction of such errors. We show how the Interaction Viewer is used in combination with the NQ-Flipper service to spot strained asparagine and glutamine rotamers and we emphasize the convenience of this service in correcting such errors. The web service is integrated with the NQ-Flipper service and accessible at http://flipper.services.came.sbg.ac.at
Medical subject headings
- Artifacts
- Models, Chemical
- Models, Molecular
- Protein Interaction Mapping
- Proteins
- User-Computer Interface