OnD-CRF: predicting order and disorder in proteins using [corrected] conditional random fields.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 18430742.
- Also identified by DOI 10.1093/bioinformatics/btn132 and PMC identifier 2387219.
- Licence recorded as CC BY-NC.
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Abstract
Order and Disorder prediction using Conditional Random Fields (OnD-CRF) is a new method for accurately predicting the transition between structured and mobile or disordered regions in proteins. OnD-CRF applies CRFs relying on features which are generated from the amino acids sequence and from secondary structure prediction. Benchmarking results based on CASP7 targets, and evaluation with respect to several CASP criteria, rank the OnD-CRF model highest among the fully automatic server group. http://babel.ucmp.umu.se/ond-crf/
Medical subject headings
- Algorithms
- Models, Chemical
- Proteins
- Sequence Analysis, Protein