GIMSAN: a Gibbs motif finder with significance analysis.
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- Record sourced from PubMed, PMID 18703586.
- Also identified by DOI 10.1093/bioinformatics/btn408.
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Abstract
We present GIMSAN (GIbbsMarkov with Significance ANalysis): a novel tool for de novo motif finding. GIMSAN combines GibbsMarkov, our variant of the Gibbs Sampler, described here for the first time, with our recently introduced significance analysis. GIMSAN is currently available as a web application and a stand-alone application on Unix and PBS (Portable Batch System) cluster through links from http://www.cs.cornell.edu/~keich.
Medical subject headings
- Algorithms
- Sequence Analysis, DNA
- Software