MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis.

Hwang, Daehee; Zhang, Ning; Lee, Hookeun; Yi, Eugene; Zhang, Hui; Lee, Inyoul Y; Hood, Leroy; Aebersold, Ruedi · Bioinformatics · 2008

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Abstract

MS-BID (MS Biomarker Discovery Platform) is an integrative computational pipeline for biomarker discovery using LC-MS-based comparative proteomic analysis. This platform consists of several computational tools for: (i) detecting peptides in the collected patterns; (ii) matching detected peptides across a number of LC-MS datasets and (iii) selecting discriminatory peptides between classes of samples. MS-BID source codes, binaries and documentations are freely available under LGPL from http://tools.proteomecenter.org/msBID.php.

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