CPSP-web-tools: a server for 3D lattice protein studies.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 19151096.
- Also identified by DOI 10.1093/bioinformatics/btp034 and PMC identifier 2647832.
- Licence recorded as CC BY-NC.
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Abstract
Studies on proteins are often restricted to highly simplified models to face the immense computational complexity of the associated problems. Constraint-based protein structure prediction (CPSP) tools is a package of very fast algorithms for ab initio optimal structure prediction and related problems in 3D HP-models [cubic and face centered cubic (FCC)]. Here, we present CPSP-web-tools, an interactive online interface of these programs for their immediate use. They include the first method for the direct prediction of optimal energies and structures in 3D HP side-chain models. This newest extension of the CPSP approach is described here for the first time. Free access at http://cpsp.informatik.uni-freiburg.de
Medical subject headings
- Computational Biology
- Proteins
- Software