NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results.
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Where this comes from
- Record sourced from PubMed, PMID 19181685.
- Also identified by DOI 10.1093/bioinformatics/btp067.
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Abstract
NOBLAST (New Options for BLAST) is an open source program that provides a new user-friendly tabular output format for various NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn, Tblastx, Mega BLAST and Psi BLAST) without any use of a parser and provides E-value correction in case of use of segmented BLAST database. JAMBLAST using the NOBLAST output allows the user to manage, view and filter the BLAST hits using a number of selection criteria. A distribution package of NOBLAST and JAMBLAST including detailed installation procedure is freely available from http://sourceforge.net/projects/JAMBLAST/ and http://sourceforge.net/projects/NOBLAST. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Computational Biology
- Sequence Alignment
- Software