FlexServ: an integrated tool for the analysis of protein flexibility.
basic_science · Level V
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- Record sourced from PubMed, PMID 19429600.
- Also identified by DOI 10.1093/bioinformatics/btp304.
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Abstract
FlexServ is a web-based tool for the analysis of protein flexibility. The server incorporates powerful protocols for the coarse-grained determination of protein dynamics using different versions of Normal Mode Analysis (NMA), Brownian dynamics (BD) and Discrete Dynamics (DMD). It can also analyze user provided trajectories. The server allows a complete analysis of flexibility using a large variety of metrics, including basic geometrical analysis, B-factors, essential dynamics, stiffness analysis, collectivity measures, Lindemann's indexes, residue correlation, chain-correlations, dynamic domain determination, hinge point detections, etc. Data is presented through a web interface as plain text, 2D and 3D graphics. http://mmb.pcb.ub.es/FlexServ; http://www.inab.org
Medical subject headings
- Computational Biology
- Proteins
- Software