NTAP: for NimbleGen tiling array ChIP-chip data analysis.
Where this comes from
- Record sourced from PubMed, PMID 19468055.
- Also identified by DOI 10.1093/bioinformatics/btp320 and PMC identifier 2705232.
- Licence recorded as CC BY-NC.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
NTAP is designed to analyze ChIP-chip data generated by the NimbleGen tiling array platform and to accomplish various pattern recognition tasks that are useful especially for epigenetic studies. The modular design of NTAP makes the data processing highly customizable. Users can either use NTAP to perform the full process of NimbleGen tiling array data analysis, or choose post-processing modules in NTAP to analyze pre-processed epigenetic data generated by other platforms. The output of NTAP can be saved in standard GFF format files and visualized in GBrowse. The source code of NTAP is freely available at http://ntap.cbi.pku.edu.cn/. It is implemented in Perl and R and can be used on Linux, Mac and Windows platforms.
Medical subject headings
- Chromatin Immunoprecipitation
- Gene Expression Profiling
- Oligonucleotide Array Sequence Analysis
- Software