Efficient stochastic simulation of reaction-diffusion processes via direct compilation.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 19578038.
- Also identified by DOI 10.1093/bioinformatics/btp387 and PMC identifier 2734316.
- Licence recorded as CC BY-NC.
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Abstract
We present the Stochastic Simulator Compiler (SSC), a tool for exact stochastic simulations of well-mixed and spatially heterogeneous systems. SSC is the first tool to allow a readable high-level description with spatially heterogeneous simulation algorithms and complex geometries; this permits large systems to be expressed concisely. Meanwhile, direct native-code compilation allows SSC to generate very fast simulations.
Medical subject headings
- Algorithms
- Computer Simulation
- Diffusion