ViTraM: visualization of transcriptional modules.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 19587224.
- Also identified by DOI 10.1093/bioinformatics/btp400.
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Abstract
We developed ViTraM, a tool that allows visualizing overlapping transcriptional modules in an intuitive way. By visualizing not only the genes and the experiments in which the genes are co-expressed, but also additional properties of the modules such as the regulators and regulatory motifs that are responsible for the observed co-expression, ViTraM can assist in the biological analysis and interpretation of the output of module detection tools. The ViTraM software is platform-independent. The software and supplementary material are available at: http://homes.esat.kuleuven.be/~kmarchal/ViTraM/Index.html
Medical subject headings
- Computational Biology
- Software
- Transcription, Genetic
- User-Computer Interface