Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks.
Where this comes from
- Record sourced from PubMed, PMID 19654116.
- Also identified by DOI 10.1093/bioinformatics/btp464 and PMC identifier 2752617.
- Licence recorded as CC BY-NC.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
Genoscape is an open-source Cytoscape plug-in that visually integrates gene expression data sets from GenoScript, a transcriptomic database, and KEGG pathways into Cytoscape networks. The generated visualisation highlights gene expression changes and their statistical significance. The plug-in also allows one to browse GenoScript or import transcriptomic data from other sources through tab-separated text files. Genoscape has been successfully used by researchers to investigate the results of gene expression profiling experiments. Genoscape is an open-source software freely available from the Genoscape webpage (http://www.pasteur.fr/recherche/unites/Gim/genoscape/). Installation instructions and tutorial can also be found at this URL.
Medical subject headings
- Computational Biology
- Gene Expression
- Software