YADA: a tool for taking the most out of high-resolution spectra.

Carvalho, Paulo C; Xu, Tao; Han, Xuemei; Cociorva, Daniel; Barbosa, Valmir C; Yates, John R · Bioinformatics · 2009

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Abstract

YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to the corresponding tandem mass spectrum, and account for different co-fragmenting ion species (multiplexed spectra). We describe how YADA enables a pipeline consisting of ProLuCID and DTASelect for analyzing large-scale middle-down proteomics data. http://fields.scripps.edu/yada

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