SnoopCGH: software for visualizing comparative genomic hybridization data.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 19687029.
- Also identified by DOI 10.1093/bioinformatics/btp488 and PMC identifier 2759554.
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Abstract
Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural variants (SVs). The visualization and summarization of the array CGH data outputs, potentially across many samples, is an important process in the identification and analysis of SVs. We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data. SnoopCGH is written in java and is available from http://snoopcgh.sourceforge.net/
Medical subject headings
- Comparative Genomic Hybridization
- Computational Biology
- Genome
- Software