Updates to the RMAP short-read mapping software.
other
Where this comes from
- Record sourced from PubMed, PMID 19736251.
- Also identified by DOI 10.1093/bioinformatics/btp533 and PMC identifier 2895571.
- Licence recorded as CC BY-NC.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
We report on a major new version of the RMAP software for mapping reads from short-read sequencing technology. General improvements to accuracy and space requirements are included, along with novel functionality. Included in the RMAP software package are tools for mapping paired-end reads, mapping using more sophisticated use of quality scores, collecting ambiguous mapping locations and mapping bisulfite-treated reads. The applications described in this note are available for download at http://www.cmb.usc.edu/people/andrewds/rmap and are distributed as Open Source software under the GPLv3.0. The software has been tested on Linux and OS X platforms. andrewds@usc.edu; mzhang@cshl.edu
Medical subject headings
- Computational Biology
- Sequence Analysis, DNA
- Software