PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 19762348.
- Also identified by DOI 10.1093/bioinformatics/btp545.
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Abstract
The increasing number of available atomic 3D structures of transmembrane channel proteins represents a valuable resource for better understanding their structure-function relationships and to eventually predict their selectivity. Herein, we present PoreLogo, an automatic tool for analysing, visualizing and comparing the amino acid composition of transmembrane channels and its conservation across the corresponding protein family. PoreLogo is accessible as a public web server at http://www.ebi.ac.uk/thornton-srv/software/PoreLogo/.
Medical subject headings
- Computational Biology
- Membrane Proteins
- Sequence Analysis, Protein
- Software