PanCGHweb: a web tool for genotype calling in pangenome CGH data.
Level V
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- Record sourced from PubMed, PMID 20219865.
- Also identified by DOI 10.1093/bioinformatics/btq103 and PMC identifier 2859125.
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Abstract
A pangenome is the total of genes present in strains of the same species. Pangenome microarrays allow determining the genomic content of bacterial strains more accurately than conventional comparative genome hybridization microarrays. PanCGHweb is the first tool that effectively calls genotype based on pangenome microarray data. PanCGHweb, the web tool is accessible from: http://bamics2.cmbi.ru.nl/websoftware/pancgh/.
Medical subject headings
- Computational Biology
- Genotype