NetRaVE: constructing dependency networks using sparse linear regression.

Phatak, A; Kiiveri, H; Clemmensen, L H; Wilson, W J · Bioinformatics · 2010

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Abstract

NetRaVE is a small suite of R functions for generating dependency networks using sparse regression methods. Such networks provide an alternative to interpreting 'top n lists' of genes arising out of an analysis of microarray data, and they provide a means of organizing and visualizing the resulting information in a manner that may suggest relationships between genes. NetRaVE is freely available for academic use and has been tested in R 2.10.1 under Windows XP, Linux and Mac OS X. Supplementary data are available at Bioinformatics online.

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