RefProtDom: a protein database with improved domain boundaries and homology relationships.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 20693322.
- Also identified by DOI 10.1093/bioinformatics/btq426 and PMC identifier 2935417.
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Abstract
UNLABELLED: RefProtDom provides a set of divergent query domains, originally selected from Pfam, and full-length proteins containing their homologous domains, with diverse architectures, for evaluating pair-wise and iterative sequence similarity searches. Pfam homology and domain boundary annotations in the target library were supplemented using local and semi-global searches, PSI-BLAST searches, and SCOP and CATH classifications. AVAILABILITY: RefProtDom is available from http://faculty.virginia.edu/wrpearson/fasta/PUBS/gonzalez09a.
Medical subject headings
- Databases, Protein