BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.
Where this comes from
- Record sourced from PubMed, PMID 20861028.
- Also identified by DOI 10.1093/bioinformatics/btq539.
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Abstract
BUCKy is a C++ program that implements Bayesian concordance analysis. The method uses a non-parametric clustering of genes with compatible trees, and reconstructs the primary concordance tree from clades supported by the largest proportions of genes. A population tree with branch lengths in coalescent units is estimated from quartet concordance factors. BUCKy is open source and distributed under the GNU general public license at www.stat.wisc.edu/∼ane/bucky/.
Medical subject headings
- Bayes Theorem
- Computational Biology
- Software