SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks.
Where this comes from
- Record sourced from PubMed, PMID 20861033.
- Also identified by DOI 10.1093/bioinformatics/btq535 and PMC identifier 2971575.
- Licence recorded as CC BY-NC.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
SpotXplore is a plugin for Cytoscape for extraction and visualization of differentially expressed subnetworks (hotspots) from gene networks. The hotspot-based visualization approach enables interactive exploration of regulatory interactions in differentially expressed gene sets, and it allows a researcher to explore gene expression in direct relation to the affected cellular gene network. The hotspots provide a view beyond the commonly used metabolic pathways and gene ontologies. http://www.win.tue.nl/∼mwestenb/spotxplore/.
Medical subject headings
- Computational Biology
- Gene Regulatory Networks
- Software